Table 2 Effect allele frequency distribution and CASZ1 variant showing association with VV in Indian population
CHR | SNP | Variation Reported in dbSNP | Minor Allele reported in dbSnp (SAS) | EA (Allele Orientation) | EAF | p value* | HWE p value | OR (95% CI) |
|---|---|---|---|---|---|---|---|---|
1 | rs72860191 | G > A,C | A | A (Reverse Strand) | 0.20 | 0.01 | 0.2 | 1.58 (1.07–2.32) |
1 | rs7519604$ | T > C | T | A (Reverse Strand) | 0.56 | 0.01 | 0.2 | 1.43 (1.05–1.94) |
1 | rs11121615$ | C > T | T | A (Reverse Strand) | 0.34 | 0.02 | 0.4 | 0.69 (0.50–0.95) |
1 | rs205488$ | T > C | T | A (Reverse Strand) | 0.45 | 0.12 | 0.8 | 1.27 (0.93–1.72) |